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1.
J Helminthol ; 98: e36, 2024 Apr 25.
Artigo em Inglês | MEDLINE | ID: mdl-38659305

RESUMO

New morphological and molecular data were generated for trematodes recovered from the intestines of the fish Pseudaspius hakonensis from two locations in the south of the Russian Far East. Morphologically, these trematodes are identical to Pseudozoogonoides ugui (Microphalloidea: Zoogonidae) from Japan. According to results of phylogenetic analysis based on 28S rDNA sequence data, P. ugui was closely related to Zoogonoides viviparus, and P. subaequiporus appears as a sister taxon to these two species. Genetic distance values, calculated based on both 28S rDNA and ITS2 rDNA, between P. ugui and Z. viviparus represents an interspecific differentiation level. Our results have an ambiguous explanation, indicating that the implication of the presence of one or two compact vitellarial aggregations for the differentiation of Zoogonoides and Pseudozoogonoides should be reconsidered or that our results open up the question of the taxonomical status of trematodes previously denoted as Z. viviparus and P. subaequiporus.


Assuntos
DNA de Helmintos , DNA Ribossômico , Doenças dos Peixes , Filogenia , RNA Ribossômico 28S , Trematódeos , Infecções por Trematódeos , Animais , Trematódeos/genética , Trematódeos/classificação , Trematódeos/anatomia & histologia , RNA Ribossômico 28S/genética , Doenças dos Peixes/parasitologia , Infecções por Trematódeos/parasitologia , Infecções por Trematódeos/veterinária , DNA de Helmintos/genética , DNA Ribossômico/genética , DNA Espaçador Ribossômico/genética , Federação Russa , Análise de Sequência de DNA , Intestinos/parasitologia
2.
Parasit Vectors ; 17(1): 135, 2024 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-38491403

RESUMO

BACKGROUND: The geographic distribution and host-parasite interaction networks of Sarcocystis spp. in small mammals in eastern Asia remain incompletely known. METHODS: Experimental infections, morphological and molecular characterizations were used for discrimination of a new Sarcocystis species isolated from colubrid snakes and small mammals collected in Thailand, Borneo and China. RESULTS: We identified a new species, Sarcocystis muricoelognathis sp. nov., that features a relatively wide geographic distribution and infects both commensal and forest-inhabiting intermediate hosts. Sarcocystis sporocysts collected from rat snakes (Coelognathus radiatus, C. flavolineatus) in Thailand induced development of sarcocysts in experimental SD rats showing a type 10a cyst wall ultrastructure that was identical with those found in Rattus norvegicus from China and the forest rat Maxomys whiteheadi in Borneo. Its cystozoites had equal sizes in all intermediate hosts and locations, while sporocysts and cystozoites were distinct from other Sarcocystis species. Partial 28S rRNA sequences of S. muricoelognathis from M. whiteheadi were largely identical to those from R. norvegicus in China but distinct from newly sequenced Sarcocystis zuoi. The phylogeny of the nuclear 18S rRNA gene placed S. muricoelognathis within the so-called S. zuoi complex, including Sarcocystis attenuati, S. kani, S. scandentiborneensis and S. zuoi, while the latter clustered with the new species. However, the phylogeny of the ITS1-region confirmed the distinction between S. muricoelognathis and S. zuoi. Moreover, all three gene trees suggested that an isolate previously addressed as S. zuoi from Thailand (KU341120) is conspecific with S. muricoelognathis. Partial mitochondrial cox1 sequences of S. muricoelognathis were almost identical with those from other members of the group suggesting a shared, recent ancestry. Additionally, we isolated two partial 28S rRNA Sarcocystis sequences from Low's squirrel Sundasciurus lowii that clustered with those of S. scandentiborneensis from treeshews. CONCLUSIONS: Our results provide strong evidence of broad geographic distributions of rodent-associated Sarcocystis and host shifts between commensal and forest small mammal species, even if the known host associations remain likely only snapshots of the true associations.


Assuntos
Doenças dos Roedores , Sarcocystis , Sarcocistose , Ratos , Animais , Sarcocistose/veterinária , Sarcocistose/parasitologia , RNA Ribossômico 28S/genética , Reação em Cadeia da Polimerase , Ratos Sprague-Dawley , RNA Ribossômico 18S/genética , Filogenia , Sciuridae , Murinae , Doenças dos Roedores/parasitologia
3.
Parasitology ; 151(4): 440-448, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38525532

RESUMO

A new species of Moniliformis, M. tupaia n. sp. is described using integrated morphological methods (light and scanning electron microscopy) and molecular techniques (sequencing and analysing the nuclear 18S, ITS, 28S regions and mitochondrial cox1 and cox2 genes), based on specimens collected from the intestine of the northern tree shrew Tupaia belangeri chinensis Anderson (Scandentia: Tupaiidae) in China. Phylogenetic analyses show that M. tupaia n. sp. is a sister to M. moniliformis in the genus Moniliformis, and also challenge the systematic status of Nephridiacanthus major. Moniliformis tupaia n. sp. represents the third Moniliformis species reported from China.


Assuntos
Acantocéfalos , Filogenia , Tupaia , Animais , Tupaia/parasitologia , Tupaia/genética , China , Acantocéfalos/genética , Acantocéfalos/classificação , Acantocéfalos/anatomia & histologia , Acantocéfalos/ultraestrutura , Helmintíase Animal/parasitologia , Microscopia Eletrônica de Varredura/veterinária , DNA de Helmintos/genética , RNA Ribossômico 18S/genética , Feminino , Masculino , RNA Ribossômico 28S/genética , Intestinos/parasitologia
4.
J Parasitol ; 110(2): 114-126, 2024 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-38503317

RESUMO

An inventory of parasites infecting the jaguar (Panthera onca) across its distribution range is relevant for the conservation of this threatened big cat. In this study, we report the occurrence of helminths in a jaguar from Mexico using morphological techniques (cleared and stained mounts and scanning electron microscopy) and partial sequences of the 28S ribosomal RNA (28S rRNA) gene and the cytochrome c oxidase 1 mitochondrial (COI) gene. We also provide an updated list of helminth species reported in jaguars in the Americas. Three helminth taxa are identified in the jaguar examined from Mexico: Toxocara cati, Physaloptera sp., and Taenia sp. The new 28S rRNA sequences of To. cati, Physaloptera sp., and Taenia sp. and the COI sequence of Taenia sp. corroborate the identity of the helminths isolated from this host. One hundred and twenty-nine records of helminths parasitizing jaguars from 49 studies up to May 2023 were identified in the Americas. In most of these studies (73.6%), helminths were identified using coproparasitological techniques. Sixteen helminths (7 nematodes, 5 cestodes, 3 acanthocephalans, and 1 trematode) were identified at the species level in free-ranging and captive jaguars. The study demonstrates the value of an integrative taxonomy approach to increase the accuracy of parasite identification in wildlife, especially when helminth specimens are scarce or poorly fixed.


Assuntos
Helmintos , Nematoides , Panthera , Animais , Panthera/genética , México/epidemiologia , RNA Ribossômico 28S/genética , Helmintos/genética
5.
J Helminthol ; 98: e24, 2024 Mar 13.
Artigo em Inglês | MEDLINE | ID: mdl-38477029

RESUMO

Here we describe a new species of the genus Saccocoelioides found parasitizing Astyanax dissimilis Garavello & Sampaio, Psalidodon bifasciatus (Garavello and Sampaio) and Bryconamericus ikaa Casciotta, Almirón & Azpelicueta from the Iguazu National Park, Misiones province, Argentina. Saccocoelioides miguelmontesi n. sp. was studied based on morphological and molecular (28S rDNA and COI mtDNA sequences) data. The COI mtDNA tree indicated that the specimens collected from the three fish hosts are conspecific, with an intragroup p-distance of 0%. The new species shows an intermediate morphological configuration between the diminutive and robust forms described for Saccocoelioides by Curran (2018). Although, in the 28S rDNA tree, it is placed in a well-supported clade with the two robust species analysed (S. elongatus and S. magnus; p-distance of 1 and 2%, respectively), it differs from the robust group by the range of body size, mature egg size, oral and ventral sucker size, sucker ratio, oral sucker to pharynx ratio, and post-cecal or post-testis/body length percentage. Our results led us to redefine the robust group as having eggs shorter or equal in length to the pharynx. Saccocoelioides miguelmontesi n. sp. the 10th species reported from Argentina and the 7th species within the robust group.


Assuntos
Characidae , Doenças dos Peixes , Trematódeos , Infecções por Trematódeos , Masculino , Animais , Rios , Filogenia , Óvulo , DNA Ribossômico , DNA Mitocondrial , RNA Ribossômico 28S/genética
6.
J Helminthol ; 98: e23, 2024 Mar 11.
Artigo em Inglês | MEDLINE | ID: mdl-38462988

RESUMO

During an ecological study with a near-endangered anuran in Brazil, the Schmidt's Spinythumb frog, Crossodactylus schmidti Gallardo, 1961, we were given a chance to analyze the gastrointestinal tract of a few individuals for parasites. In this paper, we describe a new species of an allocreadiid trematode of the genus Creptotrema Travassos, Artigas & Pereira, 1928, which possesses a unique trait among allocreadiids (i.e., a bivalve shell-like muscular structure at the opening of the ventral sucker); the new species represents the fourth species of allocreadiid trematode parasitizing amphibians. Besides, the new species is distinguished from other congeners by the combination of characters such as the body size, ventral sucker size, cirrus-sac size, and by having small eggs. DNA sequences through the 28S rDNA and COI mtDNA further corroborated the distinction of the new species. Phylogenetic analyses placed the newly generated sequences in a monophyletic clade together with all other sequenced species of Creptotrema. Genetic divergences between the new species and other Creptotrema spp. varied from 2.0 to 4.2% for 28S rDNA, and 15.1 to 16.8% for COI mtDNA, providing robust validation for the recognition of the new species. Even though allocreadiids are mainly parasites of freshwater fishes, our results confirm anurans as hosts of trematodes of this family. Additionally, we propose the reallocation of Auriculostoma ocloya Liquin, Gilardoni, Cremonte, Saravia, Cristóbal & Davies, 2022 to the genus Creptotrema. This study increases the known diversity of allocreadiids and contributes to our understanding of their evolutionary relationships, host-parasite relationships, and biogeographic history.


Assuntos
Trematódeos , Infecções por Trematódeos , Humanos , Animais , Infecções por Trematódeos/veterinária , Infecções por Trematódeos/parasitologia , Filogenia , Trematódeos/genética , DNA Ribossômico/genética , DNA Ribossômico/química , Anuros , DNA Mitocondrial/genética , Brasil , RNA Ribossômico 28S/genética
7.
Parasitology ; 151(3): 309-318, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-38223986

RESUMO

Trematodes of the family Allocreadiidae are primarily found in the intestines of freshwater fishes around the world. The family includes 15 genera and c. 130 species. The last 2 decades have witnessed an increase in the genetic library of its species. Molecular data have been crucial for species delimitation and species description within Allocreadiidae and for understanding their evolutionary and biogeographical history and classification. Here, the mitogenomes of 3 species of allocreadiids were obtained using high throughput sequencing methods. Mitogenomes were compared with other members of the order Plagiorchiida to determine their molecular composition, gene rearrangement and phylogenetic interrelationships. The complete circular mitogenomes of Allocreadium lobatum, Creptotrematina aguirrepequenoi and Wallinia mexicana were 14 424, 13 769 and 13 924 bp long respectively, comprising 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 2 non-coding regions. Gene arrangements were identical to other Xiphidiatan trematodes. Phylogenetic analyses using the mitogenomes revealed Allocreadiidae as a monophyletic group closely related to other members of the suborder Xiphidiata; A. lobatum was yielded as the sister taxon of C. aguirrepequenoi + W. mexicana. Our study increases the complete mitochondrial genome library of trematodes and strengthens our understanding of the phylogenetic relationships and classification of this parasite group.


Assuntos
Genoma Mitocondrial , Trematódeos , Infecções por Trematódeos , Animais , Filogenia , Infecções por Trematódeos/veterinária , Infecções por Trematódeos/parasitologia , RNA Ribossômico 28S/genética , Trematódeos/genética
8.
Parasitol Res ; 123(1): 113, 2024 Jan 26.
Artigo em Inglês | MEDLINE | ID: mdl-38273031

RESUMO

Prohemistomum vivax is a zoonotic small cyathocotylid trematode that inhabits the intestines of fish-eating birds and mammals. Here, we amplified the internal transcribed spacer (ITS) sequence and six mitochondrial protein-coding genes (PCGs) from P. vivax. The ITS region was 1389 base pairs long and had a partial 18S ribosomal RNA gene, a full ITS1, 5.8S rRNA, and ITS2 sequence, and a partial 28S rRNA gene. The ITS region of P. vivax showed a minimum pairwise distance (0.3-0.6%) from the ITS sequences of Cyathocotylidae sp. 1 and 2 metacercariae from Clarias gariepinus. This result suggests that these metacercariae belong to P. vivax metacercariae. We first amplified mitochondrial genes from P. vivax, including cytochrome c oxidase subunit III (cox3) partial sequence; tRNA-His, cytochrome b (cytb), and NADH dehydrogenase subunit 4L (nad4L) complete sequences; and NADH dehydrogenase subunit 4 (nad4), cytochrome c oxidase I (cox1), and NADH dehydrogenase subunit 5 (nad5) partial sequences. P. vivax was most closely related to Cyathocotyle prussica (NC_039780) and Holostephanus sp. (OP082179), with cox1, cox3, and cytb genes conserved among the three trematodes. The ML phylogenetic tree of ITS sequences supports the order Diplostomida, divided into two main clades (the superfamily Diplostomoidea and Schistosomatoidea). The phylogeny of concatenated amino acid sequences of P. vivax six PCGs revealed that diplostomoids and Clinostomum sp. evolved in a clade with Plagiorchiida members, away from Schistosoma species. These results may yield ribosomal and mitochondrial genetic markers for molecular epidemiological investigations of cyathocotylid intestinal flukes.


Assuntos
Genes Mitocondriais , Trematódeos , Animais , Filogenia , NADH Desidrogenase/genética , Trematódeos/genética , RNA Ribossômico 28S/genética , Mamíferos
9.
Parasitology ; 151(1): 24-44, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37953070

RESUMO

Hemiurid digeneans conspecific with Stomachicola muraenesocis Yamaguti, 1934 (the type species of the genus Stomachicola Yamaguti, 1934) were collected from the stomach of the daggertooth pike conger Muraenesox cinereus (Forsskål) off the Persian Gulf of Iran. This study aimed to provide a detailed characterization of Stom. muraenesocis, including measurements, illustrations and scanning electron microscopy (s.e.m.) representations. Comparisons with the original and previous descriptions revealed morphological and metrical variations in several features (i.e. body size and shape, arrangement of reproductive organs, soma to ecsoma length ratio, position of genital opening, number of vitelline tubules and extension of uterine coils) between Stom. muraenesocis from different hosts and localities. This study presents the first molecular sequence data associated with the small (18S) and large (28S) subunit nuclear ribosomal RNA genes (rDNA) for Stom. muraenesocis. Phylogenetic analyses of the 18S dataset placed Stom. muraenesocis as sister lineage to a clade formed of a group of species of Lecithaster Lühe, 1901 (Lecithasteridae Odhner, 1905). In contrast, phylogenetic analyses based on the 28S consistently recovered a sister relationship between Stom. muraenesocis and representatives of the Hemiuridae Looss, 1899. Further comprehensive phylogenetically based classification in light of morphology and taxonomic history of the Hemiuridae and Lecithasteridae is required to infer phylogenetic affinities and historical biogeography of Stomachicola. A comprehensive list of previously reported species of Stomachicola together with their associated hosts, localities and morphometric data is provided.


Assuntos
Esocidae , Trematódeos , Animais , Esocidae/genética , Filogenia , Peixes , Dados de Sequência Molecular , DNA Ribossômico/genética , RNA Ribossômico 28S/genética
10.
J Helminthol ; 97: e89, 2023 Nov 30.
Artigo em Inglês | MEDLINE | ID: mdl-38032079

RESUMO

The application of integrative taxonomic approaches is useful to species delineation based on a combination of distinct types of characters, here morphological features and ribosomal DNA sequences. In this study, we surveyed ectoparasitic nematodes of the subfamily Merliniinae in cultivated and natural environments in Iran. Results of morphological and morphometrical studies, light and scanning electron microscopic observations, and molecular analyses allowed us the identification of fourteen known and one unknown species including representatives of the genera Amplimerlinius (five species), Geocenamus (one species), Merlinius (three species), Nagelus (two species), Paramerlinius (one species), Scutylenchus (two species), and Telomerlinius (one species). The unknown species, Scutylenchus sp., characterized by having 35-50 incisures at mid-body; lateral field with 6 longitudinal incisures; lip region slightly offset by a constriction, flattened at front end; bearing 5-7 annuli; cephalic framework not refractive; stylet robust, 18.3-27 µm long; post anal intestinal sac absent; tail elongate conical, dorsally convex, with 24 (19-28) annuli in ventral side, ending to a smooth terminus and males common; spicules 24.5-31 µm long. The phylogenetic analyses were carried out using molecular data from nuclear ribosomal DNA (rDNA) genes viz. D2-D3 expansion segments of the large ribosomal subunit (28S rRNA), partial small ribosomal subunit (18S rRNA), and internal transcribed spacer (ITS). The molecular variability of D2-D3 expansion segments of the 28S rRNA and partial 18S rRNA was low in this family in comparison to the ITS region, which could be a more helpful molecular marker in species and genus identification.


Assuntos
Nematoides , Tylenchoidea , Masculino , Animais , Filogenia , RNA Ribossômico 28S/genética , RNA Ribossômico 18S/genética , Tylenchoidea/genética , DNA Ribossômico/genética
11.
Mycologia ; 115(6): 904-917, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37782558

RESUMO

Cortinarius sect. Camphorati consists of telamonioid species with violet basidioma, strong odor, and distinct cheilocystidia. In this study, phylogenetic analysis based on nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS) and partial nuc rDNA 28S sequences has revealed three new species of the section from southwestern China, namely, C. longicystidiatus, C. megacystidiatus, and C. paraputorius, and a newly recorded species from southwestern China, viz., C. camphoratus, supplemented by the support from calculations of genetic distances of ITS sequences. Detailed descriptions of the four species are given with photographs, and their micromorphological characteristics are statistically compared. For species delimitation within the section, the size of basidiospores, the morphology of cheilocystidia, and the associated vegetation types and tree species are informative. A key to species in section Camphorati from the Northern Hemisphere is provided, and their geographic distributions and ecology are discussed.


Assuntos
Cortinarius , DNA Espaçador Ribossômico/genética , Filogenia , Análise de Sequência de DNA , DNA Fúngico/genética , DNA Ribossômico/genética , China , RNA Ribossômico 28S/genética
12.
J Helminthol ; 97: e68, 2023 Aug 24.
Artigo em Inglês | MEDLINE | ID: mdl-37612585

RESUMO

Phyllodistomum pepirense n. sp. is described from the urinary bladder of Hoplias malabaricus (Bloch, 1794), sampled in the Jacaré-Pepira River in São Paulo state, Brazil. The isolates of the new species were recovered as a monophyletic group in the phylogenetic analysis of the 28S rRNA gene, which showed the new species as the sister taxa of Phyllodistomum virmantasi Pinacho-Pinacho, Sereno-Uribe, Hernández-Orts, García-Varela & Pérez-Ponce de León, 2021, a species sampled from an eleotrid fish in Southeastern Mexico. The new species differs morphologically from P. virmantasi by having a larger body size, slightly lobed testes and ovary, a mostly intercaecal uterus, slightly diverticulated caeca, and vitelline masses irregularly shaped. The new species is also readily distinguished from other species of Phyllodistomum Braun, 1899 reported from freshwater fishes in Brazil - namely, P. rhamdiae Amato & Amato, 1993 and P. spatula Odhner, 1902. The new species is herein described based on morphological characteristics, molecular data from D1-D3 domains of the 28S rRNA gene, host association, and geographical distribution.


Assuntos
Caraciformes , Trematódeos , Animais , Feminino , Brasil , Filogenia , Trematódeos/genética , Tamanho Corporal , RNA Ribossômico 28S/genética
13.
Parasitol Res ; 122(10): 2325-2334, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37572128

RESUMO

Trematodes of the genus Metagonimus Katsurada, 1912 (Digenea: Heterophyidae) are zoonotic parasites that cause infections in humans, with most cases reported in Southeast Asia. Larvae from the second intermediate host, called metacercariae, of one of human-infecting species, M. yokogawai (Katsurada, 1912), have been reported from cyprinoid fish in Europe. In the present study, we provided DNA-based evidence that metacercariae of Metagonimus, which are commonly found in the scales of various cyprinoids in Central Europe (Danube River in Hungary) do not belong to M. yokogawai. Sequence analysis of the ITS region, 28S rDNA, and cox1 genes showed that this species is clearly distinct from all Asian species, including M. yokogawai, which probably does not occur in Europe. Metacercariae from cyprinoids might belong to Metagonimus romanicus (Ciurea, 1915), an insufficiently known species described from Romania.


Assuntos
Cipriniformes , Heterophyidae , Rios , Heterophyidae/classificação , Heterophyidae/genética , Heterophyidae/isolamento & purificação , Animais , Rios/parasitologia , Hungria , Cipriniformes/parasitologia , Filogenia , RNA Ribossômico 28S/genética , Complexo IV da Cadeia de Transporte de Elétrons/genética
14.
J Helminthol ; 97: e65, 2023 Aug 04.
Artigo em Inglês | MEDLINE | ID: mdl-37539517

RESUMO

A new species belonging to the genus Laimydorus, and a known species of the genus Labronema, collected from the rhizosphere of grassland plants in West Azarbaijan province, Iran, are presented. The new species is characterized by its body length (1.56-1.81 mm in females and 1.39-1.57 mm in males), lip region offset by weak constriction and wider than adjacent body (11-14 µm), odontostyle 17-20 µm long, neck length 312-434 µm, vulva longitudinal (V = 42.2-46.5), uterus well-developed and with Z-differentiations, tail long (219-237 µm, c = 6.9-8.3, c´ = 8.2-10) in females, short and convex-conoid with blunt terminus (19-22 µm, c = 68-72.5, c´= 0.77-0.84) in males, spicules 40-45 µm long, and 18-20 contiguous ventromedian supplements with hiatus. Molecular analyses, using Bayesian inference based on D2-D3 expansion segments of the 28S rRNA (LSU), placed the new species in a clade comprising representatives of the genera Nevadanema, Dorylaimus, Labronema, Calcaridorylaimus, Mesodorylaimus, and Prodorylaimus, which all belong to Dorylaimidae. In addition, new data (molecular, morphometrics, images, and geographic distribution) are presented for the Iranian population of Labronema vulvapapillatum.


Assuntos
Helmintos , Nematoides , Masculino , Feminino , Animais , Irã (Geográfico) , Teorema de Bayes , Helmintos/genética , RNA Ribossômico 28S/genética
15.
Plant Dis ; 107(12): 3693-3700, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37415354

RESUMO

Meloidogyne incognita is considered the most damaging and common root-knot nematode to numerous host plants worldwide. During a survey of nematodes in Vietnam, 1,106 samples from 22 different plant species were collected. M. incognita was recorded on 13 of the 22 host plants. Four populations of M. incognita from four host plants were chosen for comparison and confirmation of their morphologic, morphometric, and molecular characteristics. Genetically based phylogenetic trees were constructed to show relationships among root-knot nematodes. Molecular barcodes of four gene regions, ITS, D2-D3 of 28S rRNA, COI, and Nad5 mtDNA, integrated with morphologic and morphometric data were used as reliable references for molecular identification of M. incognita. Our analyses indicated that tropical root-knot nematodes are very similar in characterization of ITS, D2-D3 of 28S rRNA, and COI regions. However, these gene regions can be used to separate the tropical root-knot nematode group from other groups. On the other hand, the analysis of Nad5 mtDNA and multiplex-PCR with specific primers can be used to distinguish tropical species.


Assuntos
Tylenchoidea , Animais , Tylenchoidea/genética , Doenças das Plantas/genética , Vietnã , RNA Ribossômico 28S/genética , Filogenia , DNA Mitocondrial
16.
Mycologia ; 115(5): 674-692, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37409884

RESUMO

Mucor species are a group of common soil-borne fungi, known to cause infections on humans and animals, interfere in food production, and act as useful agents in biotechnological applications. This study reports one new Mucor species, M. yunnanensis, which was found to be fungicolous on an Armillaria sp. from southwest China. Further, M. circinelloides on Phlebopus sp., M. hiemalis on Ramaria sp. and Boletus sp., M. irregularis on Pleurotus sp., M. nederlandicus on Russula sp., and M. yunnanensis on Boletus sp. are reported as new host records. Mucor yunnanensis and M. hiemalis have been collected from Yunnan Province in China, whereas M. circinelloides, M. irregularis, and M. nederlandicus have been collected from Chiang Mai and Chiang Rai Provinces in Thailand. All the Mucor taxa reported herein were identified based on both morphology and phylogenetic analyses of a combined nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS) and partial nuc 28S rDNA (28S) sequence matrix. Comprehensive descriptions, illustrations, and a phylogenetic tree are provided for all the taxa reported in the study to show the placements of taxa, and the new taxon is compared with its sister taxa.


Assuntos
Agaricales , Ascomicetos , Basidiomycota , Animais , Humanos , Agaricales/genética , China , Filogenia , DNA Espaçador Ribossômico/genética , Mucor/genética , Tailândia , RNA Ribossômico 28S/genética , DNA Ribossômico/genética , Basidiomycota/genética , Análise de Sequência de DNA
17.
J Helminthol ; 97: e48, 2023 Jun 22.
Artigo em Inglês | MEDLINE | ID: mdl-37345288

RESUMO

This is the first study reporting parasites from the freshwater cyprinid Oxynoemacheilus angorae (Steindachner 1897) caught in Nilüfer Stream, Bursa, in the Northwest Anatolian Region of Turkey. Allocreadium bursensis n. sp. was described from the intesine of O.angorae based on morphological and genetic characteristics. Allocreadium bursensis n. sp. was differentiated from other Allocreadium spp. in having a combination of external (ventral and oral suckers ratio; body length and width and its ratio to forebody) and internal (cirrus pouch position; uterus extension in hindbody; egg size; disposition of anterior border of vitellarium; esophagus length) features. Phylogenetic hypotheses based on maximum parsimony, maximum likelihood, Bayesian inferrence, and neighbor joining analyses of sequence data strongly supported the hypothesis that A. bursensis is nested within the clade of Allocreadium species hosted by cypriniform fish, and it is more closely related to the Far Eastern species A. pseudoisoporum (Primorsky region, Russia) than to the African A. apokryfi. According to genetic p-distances, the taxonomic status of trematodes collected in Turkey was established as independent relative to nine of the valid Allocreadium spp.: 1.8-5.8% in 28S gene and 18.8-22.6% in cox1 gene. The present study increases the number of Allocreadium species and their definitive hosts recorded in Turkey and raises the number of Palearctic representatives of Allocreadium spp. to 26.


Assuntos
Cyprinidae , Trematódeos , Infecções por Trematódeos , Feminino , Animais , Turquia , Filogenia , Teorema de Bayes , RNA Ribossômico 28S/genética , Infecções por Trematódeos/veterinária , Infecções por Trematódeos/parasitologia
18.
PeerJ ; 11: e15427, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37334134

RESUMO

Background: Zooplankton plays an important role in the marine ecosystem. A high level of taxonomic expertise is necessary for accurate species identification based on morphological characteristics. As an alternative method to morphological classification, we focused on a molecular approach using 18S and 28S ribosomal RNA (rRNA) gene sequences. This study investigates how the accuracy of species identification by metabarcoding improves when taxonomically verified sequences of dominant zooplankton species are added to the public database. The improvement was tested by using natural zooplankton samples. Methods: rRNA gene sequences were obtained from dominant zooplankton species from six sea areas around Japan and registered in the public database for improving the accuracy of taxonomic classifications. Two reference databases with and without newly registered sequences were created. Comparison of detected OTUs associated with single species between the two references was done using field-collected zooplankton samples from the Sea of Okhotsk for metabarcoding analysis to verify whether or not the newly registered sequences improved the accuracy of taxonomic classifications. Results: A total of 166 sequences in 96 species based on the 18S marker and 165 sequences in 95 species based on the 28S marker belonging to Arthropoda (mostly Copepoda) and Chaetognatha were registered in the public database. The newly registered sequences were mainly composed of small non-calanoid copepods, such as species belonging to Oithona and Oncaea. Based on the metabarcoding analysis of field samples, a total of 18 out of 92 OTUs were identified at the species level based on newly registered sequences in the data obtained by the 18S marker. Based on the 28S marker, 42 out of 89 OTUs were classified at the species level based on taxonomically verified sequences. Thanks to the newly registered sequences, the number of OTUs associated with a single species based on the 18S marker increased by 16% in total and by 10% per sample. Based on the 28S marker, the number of OTUs associated with a single species increased by 39% in total and by 15% per sample. The improved accuracy of species identification was confirmed by comparing different sequences obtained from the same species. The newly registered sequences had higher similarity values (mean >0.003) than the pre-existing sequences based on both rRNA genes. These OTUs were identified at the species level based on sequences not only present in the Sea of Okhotsk but also in other areas. Discussion: The results of the registration of new taxonomically verified sequences and the subsequent comparison of databases based on metabarcoding data of natural zooplankton samples clearly showed an increase in accuracy in species identification. Continuous registration of sequence data covering various environmental conditions is necessary for further improvement of metabarcoding analysis of zooplankton for monitoring marine ecosystems.


Assuntos
Ecossistema , Zooplâncton , Animais , Zooplâncton/genética , RNA Ribossômico 28S/genética , Genes de RNAr , Biodiversidade
19.
Parasitol Res ; 122(8): 1923-1933, 2023 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-37326846

RESUMO

The genus Allocreadium is a group of digenetic trematodes whose adult representatives mainly parasitize the intestines of freshwater fishes. The aim of this research is to reconstruct the phylogeny of four Palearctic species of this genus, Allocreadium dogieli, Allocreadium isoporum, Allocreadium papilligerum, and Allocreadium sp. ex Oreoleuciscus potanini from Mongolia. The DNA sequences of the 28S rRNA gene and the rDNA ITS2 region were obtained and then analyzed for phylogenetic inference. The analysis is complemented with the morphological descriptions for all four species. Phylogenetic analyses show that the newly obtained isolate of A. isoporum appeared to be genetically similar to previously obtained isolates of A. isoporum. Allocreadium dogieli probably belongs to the same evolutionary lineage of Allocreadium as A. crassum, while A. papilligerum to the same evolutionary lineage as Alocreadium transversale ex Cobitis taenia from Lithuania, but the detailed species composition of these lineages requires further elucidation. Allocreadium sp. was genetically close to Allocreadium sp. ex P. phoxinus from Primorski Krai, Russia, and a group of these Allocreadium had a sister relationship with Allocreadium khankaiensis. Our findings contradict some recent hypotheses about the phylogeography of Allocreadium spp.


Assuntos
Cipriniformes , Trematódeos , Infecções por Trematódeos , Animais , Filogenia , DNA Ribossômico/genética , Sequência de Bases , RNA Ribossômico 28S/genética , Infecções por Trematódeos/veterinária , Infecções por Trematódeos/genética
20.
Zootaxa ; 5249(5): 589-597, 2023 Mar 06.
Artigo em Inglês | MEDLINE | ID: mdl-37044743

RESUMO

We provide a morphological and molecular-based description of the eumonostiliferous hoplonemertean Oerstedia fuscosparsa sp. nov. based on two specimens dredged from a depth between 11 and 18 m off Kouyatsu, Tateyama, Chiba, Japan. This Oerstedia differs from its congeners by having a deep brownish pigmentation in the head, four orange ocelli, and imprecise dorsal and ventral transverse bands composed of numerous small brown spots. One of the specimens, herein designated as the holotype, has deep brown spots situated mid-dorsally onto the transverse bands running throughout the body. These dorsal markings are absent in the other specimen designated as a paratype. Internally, the species has accessory lateral nerves, and the proboscis nerves are not distinct. Molecular phylogenetic analyses based on partial sequences of the 16S, 18S, 28S rRNA, cytochrome c oxidase subunit I, and histone H3 gene markers along with the sequences from 22 Oerstedia species available in public databases confirmed that our species is sister to Oerstedia phoresiae (Kulikova, 1987) and belongs to the recently established Paroerstediella clade within the genus Oerstedia.


Assuntos
Acantocéfalos , Animais , Filogenia , Japão , RNA Ribossômico 28S/genética , Pigmentação
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